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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
19
total RNA-seq
5
ChIP-seq
4
DNase-seq
4
pCHi-C
1
RRBS
Assay category
19
Transcription
5
DNA binding
4
DNA accessibility
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
20
October, 2019
7
June, 2019
4
February, 2023
1
February, 2020
1
July, 2019
Available data
7
bam
6
bed narrowPeak
6
bigBed narrowPeak
6
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
33
Homo sapiens
Biosample type
28
tissue
5
primary cell
Organ
725
liver
715
pancreas
614
connective tissue
465
adipose tissue
375
epithelium
289
heart
264
kidney
209
brain
147
bone element
143
vasculature
137
blood vessel
82
artery
80
limb
75
musculature of body
68
blood
68
bodily fluid
33
embryo
33
eye
26
nerve
20
lung
20
spleen
18
ureter
13
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
33
AMP
Genome assembly (visualization)
7
hg19
6
GRCh38
Lab
33
AMP-T2D consortium
files.file_type!
hdf5
assay_title!
ATAC-seq
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
33 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
RRBS
tissue
islet of Langerhans
14
2
4
retina
3
3
pigmented layer of retina
2
primary cell
retinal pigment epithelial cell
3
1
1
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