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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
37
DNA accessibility
24
Transcription
2
DNA methylation
Target of assay
3
control
Date released
30
June, 2019
15
July, 2019
12
February, 2020
2
March, 2020
2
November, 2018
2
October, 2019
1
February, 2023
1
October, 2017
Available data
50
bigWig
47
bam
35
bed bed3+
33
bed narrowPeak
33
bigBed narrowPeak
32
bed broadPeak
32
bigBed broadPeak
26
tsv
3
fastq
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
65
Homo sapiens
Biosample type
56
tissue
9
primary cell
Organ
727
pancreas
530
connective tissue
418
adipose tissue
393
epithelium
302
kidney
259
heart
238
liver
159
bone element
132
vasculature
129
blood vessel
107
artery
65
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
65
AMP
Genome assembly (visualization)
46
GRCh38
38
hg19
Lab
65
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
hdf5
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
65 results
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DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
14
1
1
1
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
1
1
1
Ammon's horn
1
1
1
caudate nucleus
1
1
+ See 20 more…
primary cell
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 2 more…
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