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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
56
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
56
DNA binding
8
DNA accessibility
6
DNA methylation
3
Transcription
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
45
August, 2017
18
October, 2018
3
July, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
30
bam
27
fastq
13
bigWig
8
bed narrowPeak
8
tagAlign
5
bigBed narrowPeak
4
tsv
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
75
Homo sapiens
Biosample type
74
tissue
1
in vitro differentiated cells
1
primary cell
Organ
523
pancreas
382
epithelium
304
heart
284
kidney
263
brain
263
liver
169
connective tissue
164
vasculature
159
blood vessel
115
limb
97
bone element
90
musculature of body
80
artery
76
adipose tissue
41
eye
38
nerve
22
vein
20
embryo
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
76
AMP
Genome assembly (visualization)
13
hg19
11
GRCh38
Lab
76
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
hdf5
assay_title!
total RNA-seq
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
76 results
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ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
10
1
1
1
omental fat pad
8
1
1
2
adipose tissue
2
3
3
1
adipose tissue(adipose white tissue)
1
in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
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