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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
342
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
small RNA-seq
2
ATAC-seq
1
WGBS
Assay category
342
DNA binding
162
Transcription
7
DNA accessibility
1
DNA methylation
Target of assay
282
transcription factor
81
recombinant protein
57
histone
57
histone modification
51
RNA binding protein
36
narrow histone mark
21
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
Date released
217
November, 2017
162
May, 2020
52
November, 2018
50
December, 2017
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
512
bam
510
bigWig
349
bed narrowPeak
324
fastq
320
bigBed narrowPeak
162
tsv
49
bed broadPeak
49
bigBed broadPeak
31
tagAlign
8
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
512
Homo sapiens
Biosample type
268
cell line
219
tissue
14
in vitro differentiated cells
11
primary cell
Organ
512
liver
501
connective tissue
482
pancreas
408
adipose tissue
277
epithelium
266
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
512
AMP
Genome assembly (visualization)
604
hg19
512
GRCh38
Lab
512
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
files.file_type!
hdf5
month_released!
August, 2017
BIOSAMPLE
ASSAY
512 results
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ChIP-seq
total RNA-seq
DNase-seq
small RNA-seq
ATAC-seq
WGBS
cell line
HepG2
261
5
1
1
tissue
liver
57
147
2
1
right lobe of liver
7
2
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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