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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
Assay category
58
DNA binding
Target of assay
33
histone
33
histone modification
25
transcription factor
17
broad histone mark
16
narrow histone mark
13
chromatin remodeller
6
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
18
August, 2017
11
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
59
bigWig
58
bam
58
fastq
56
bed narrowPeak
33
bigBed narrowPeak
15
bed broadPeak
14
bigBed broadPeak
13
tagAlign
11
bed bed3+
hdf5
Organism
57
Homo sapiens
Biosample type
26
cell line
17
in vitro differentiated cells
7
tissue
6
primary cell
2
stem cell
Organ
27
liver
10
pancreas
6
connective tissue
5
epithelium
3
embryo
Project
58
AMP
Genome assembly (visualization)
58
hg19
54
GRCh38
Lab
58
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
56
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
files.file_type!
hdf5
BIOSAMPLE
ASSAY
58 results
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ChIP-seq
cell line
HepG2
26
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
tissue
pancreas
5
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
2
stem cell
hESC
2
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