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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
42
ATAC-seq
41
WGBS
33
single cell RNA-seq
21
snATAC-seq
3
DNase-seq
1
RRBS
Assay category
120
DNA binding
66
DNA accessibility
42
DNA methylation
33
Transcription
Target of assay
75
histone
75
histone modification
38
narrow histone mark
36
broad histone mark
24
transcription factor
21
control
6
RNA binding protein
3
chromatin remodeller
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
71
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
28
December, 2018
27
July, 2019
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
134
zippedFastqFolder
112
bam
112
fastq
94
bigWig
76
bed narrowPeak
26
tagAlign
20
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
7
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
Organism
261
Homo sapiens
Biosample type
tissue
193
primary cell
68
in vitro differentiated cells
Organ
121
pancreas
109
epithelium
68
connective tissue
Project
134
HPAP
127
AMP
Genome assembly (visualization)
96
hg19
91
GRCh38
Lab
134
Klaus Kaestner, Upenn
127
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
hdf5
biosample_type!
tissue
BIOSAMPLE
ASSAY
261 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
DNase-seq
RRBS
primary cell
pancreatic alpha cell
13
23
25
Langerhans cell
33
21
pancreatic beta cell
13
14
16
skeletal muscle myoblast
15
2
1
pancreatic endocrine cell
12
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in vitro differentiated cells
adipocyte
67
1
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