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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
6
MeRIP-seq
1
ATAC-seq
1
Hi-C
1
total RNA-seq
Assay category
13
DNA binding
1
3D chromatin structure
1
DNA accessibility
1
Transcription
Target of assay
10
histone
10
histone modification
6
broad histone mark
5
control
4
narrow histone mark
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
29
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
15
bam
12
bed narrowPeak
12
bigWig
1
bedpe bed3+
1
hic
1
tsv
Organism
22
Homo sapiens
Biosample type
44
tissue
22
cell line
6
primary cell
5
in vitro differentiated cells
Organ
22
epithelium
22
pancreas
Project
22
AMP
Genome assembly (visualization)
14
hg19
13
GRCh38
Lab
16
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
22
inconsistent ontology term
files.file_type!
hdf5
BIOSAMPLE
ASSAY
22 results
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Clear Filters
ChIP-seq
MeRIP-seq
ATAC-seq
Hi-C
total RNA-seq
cell line
EndoC_BH1
13
6
1
1
1
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