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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
ChIP-seq
99
total RNA-seq
28
ATAC-seq
6
MeRIP-seq
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
105
DNA binding
101
Transcription
30
DNA accessibility
1
3D chromatin structure
Target of assay
63
transcription factor
23
control
20
histone
20
histone modification
11
RNA binding protein
10
broad histone mark
10
narrow histone mark
9
chromatin remodeller
7
recombinant protein
3
nucleotide modification
Date released
94
February, 2021
29
October, 2019
26
December, 2018
21
May, 2021
18
January, 2019
16
November, 2019
15
November, 2018
13
August, 2021
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
October, 2022
Available data
215
bam
189
bigWig
104
tsv
95
bed narrowPeak
61
bigBed narrowPeak
59
fastq
8
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
hdf5
1
hic
1
txt
Organism
255
Homo sapiens
Biosample type
2416
tissue
1071
primary cell
379
in vitro differentiated cells
259
cell line
10
stem cell
Organ
liver
91
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
60
blood
60
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
248
AMP
9
T1D
2
community
Genome assembly (visualization)
198
hg19
194
GRCh38
Lab
243
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
92
inconsistent ontology term
inconsistent control
files.file_type!
hdf5
organ_slims!
liver
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
259 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
STARR-seq
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
Hi-C
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
EndoC_BH1
15
33
19
6
3
2
2
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
59
1
Panc1
13
1
H1-hESC
8
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