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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ChIP-seq
27
ATAC-seq
6
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
106
DNA binding
29
DNA accessibility
2
Transcription
1
3D chromatin structure
Target of assay
64
transcription factor
23
control
20
histone
20
histone modification
11
RNA binding protein
10
broad histone mark
10
chromatin remodeller
10
narrow histone mark
7
recombinant protein
3
nucleotide modification
Date released
27
December, 2018
25
October, 2019
18
January, 2019
17
May, 2021
16
February, 2021
15
November, 2018
15
November, 2019
6
February, 2023
6
November, 2020
5
August, 2021
2
March, 2020
2
March, 2023
1
January, 2018
1
October, 2022
Available data
216
bam
190
bigWig
tsv
96
bed narrowPeak
62
bigBed narrowPeak
60
fastq
8
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
hdf5
1
hic
1
txt
Organism
152
Homo sapiens
Biosample type
1494
tissue
806
primary cell
248
in vitro differentiated cells
156
cell line
6
stem cell
Organ
liver
61
blood
61
bodily fluid
57
pancreas
44
epithelium
14
artery
14
blood vessel
14
heart
14
vasculature
13
kidney
Project
147
AMP
7
T1D
2
community
Genome assembly (visualization)
99
hg19
96
GRCh38
Lab
140
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
53
inconsistent ontology term
1
inconsistent control
files.file_type!
hdf5
tsv
organ_slims!
liver
BIOSAMPLE
ASSAY
156 results
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ChIP-seq
ATAC-seq
MeRIP-seq
CRISPR genome editing followed by DNA sequencing
STARR-seq
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
Hi-C
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
GM12878
60
1
EndoC_BH1
15
18
6
3
2
2
1
1
Panc1
13
1
smooth muscle cell of the coronary artery
6
8
RCC 7860 HIF1a re-expression
4
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