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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
66
total RNA-seq
9
ATAC-seq
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
DNase-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
78
DNA binding
68
Transcription
10
DNA accessibility
Target of assay
63
transcription factor
12
control
10
RNA binding protein
10
chromatin remodeller
7
recombinant protein
1
histone
1
histone modification
1
narrow histone mark
Date released
68
February, 2021
27
December, 2018
18
January, 2019
15
November, 2018
15
October, 2019
11
August, 2021
6
March, 2020
5
February, 2023
2
March, 2023
1
January, 2018
1
October, 2022
Available data
153
bam
134
bigWig
75
bed narrowPeak
70
tsv
60
fastq
55
bigBed narrowPeak
8
tagAlign
1
txt
Organism
166
Homo sapiens
Biosample type
1911
tissue
725
primary cell
376
in vitro differentiated cells
169
cell line
10
stem cell
Organ
liver
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
162
AMP
5
T1D
2
community
Genome assembly (visualization)
142
hg19
141
GRCh38
Lab
159
AMP-T2D consortium
5
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
16
inconsistent ontology term
1
inconsistent control
files.file_type!
hdf5
organ_slims!
liver
pancreas
BIOSAMPLE
ASSAY
169 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
STARR-seq
HiChIP
DNase-seq
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
H1-hESC
8
EndoC_BH1
3
2
RCC 7860 HIF1a re-expression
4
1
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