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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
pCHi-C
1
single cell RNA-seq
Assay category
39
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
1
DNA accessibility
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
10
July, 2019
10
June, 2019
7
May, 2019
4
March, 2020
2
February, 2020
1
January, 2018
1
May, 2022
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
bed bed3+
33
bigBed broadPeak
15
tagAlign
8
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
61
Homo sapiens
Biosample type
48
tissue
13
primary cell
Organ
916
pancreas
776
liver
653
connective tissue
503
epithelium
483
adipose tissue
360
heart
274
kidney
249
brain
222
vasculature
218
blood vessel
158
bone element
137
artery
86
limb
69
blood
69
bodily fluid
61
musculature of body
53
eye
41
nerve
34
embryo
23
spleen
20
vein
19
lung
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
61
AMP
Genome assembly (visualization)
39
hg19
20
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
files.file_type!
hdf5
bed bed3+
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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