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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
ATAC-seq
74
total RNA-seq
40
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
40
DNA binding
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
12
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
691
February, 2021
406
November, 2017
373
August, 2017
363
May, 2021
284
October, 2019
241
May, 2020
238
August, 2021
168
July, 2018
122
May, 2022
120
May, 2019
102
February, 2023
98
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
October, 2017
14
November, 2020
10
December, 2019
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
4
September, 2017
3
June, 2018
1
August, 2022
1
March, 2019
Available data
123
tsv
57
txt
45
bigWig
39
bam
30
bed narrowPeak
24
tagAlign
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
237
Homo sapiens
Biosample type
165
tissue
44
cell line
28
in vitro differentiated cells
1
primary cell
Organ
92
heart
66
kidney
32
liver
8
embryo
6
blood vessel
6
vasculature
4
pancreas
3
epithelium
2
artery
1
adipose tissue
1
connective tissue
Project
238
AMP
Genome assembly (visualization)
43
hg19
28
GRCh38
Lab
138
AMP-T2D consortium
64
Katalin Susztak, Upenn
36
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
files.file_type!
hdf5
bed bed3+
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
238 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
21
primary cell
hepatocyte
1
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