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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
73
total RNA-seq
40
ChIP-seq
6
snATAC-seq
5
STARR-seq
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
179
Transcription
82
DNA accessibility
40
DNA binding
2
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
12
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
681
February, 2021
406
November, 2017
341
May, 2020
336
May, 2021
310
August, 2021
290
October, 2019
209
August, 2017
145
February, 2023
118
May, 2019
98
July, 2019
95
May, 2022
80
April, 2019
79
December, 2017
74
November, 2018
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
5
March, 2023
5
November, 2020
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
122
tsv
106
bed narrowPeak
64
xls
57
txt
49
bam
47
bigWig
24
tagAlign
bed bed3+
2
hic
1
bedpe bed3+
1
vcf
Organism
309
Homo sapiens
Biosample type
227
tissue
42
cell line
40
in vitro differentiated cells
1
primary cell
Organ
130
kidney
92
heart
32
liver
8
embryo
6
blood vessel
6
vasculature
pancreas
3
connective tissue
3
epithelium
2
artery
1
adipose tissue
Project
310
AMP
Genome assembly (visualization)
102
GRCh38
55
hg19
Lab
146
AMP-T2D consortium
128
Katalin Susztak, Upenn
34
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
files.file_type!
hdf5
bed bed3+
organ_slims!
pancreas
BIOSAMPLE
ASSAY
310 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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cell line
HepG2
9
18
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
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