Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
5
STARR-seq
4
ChIP-seq
1
ATAC-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
10
Transcription
4
DNA binding
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
4
control
Date released
20
August, 2021
2
March, 2019
Available data
bed narrowPeak
14
bigWig
10
tsv
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
22
Homo sapiens
Biosample type
19
cell line
3
tissue
Organ
16
liver
3
pancreas
2
kidney
Project
22
AMP
Genome assembly (visualization)
2
hg19
1
GRCh38
Lab
2346
AMP-T2D consortium
321
Klaus Kaestner, Upenn
211
Kyle Gaulton, UCSD
78
Katalin Susztak, Upenn
47
KPMP
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
3
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
files.file_type!
hdf5
bedpe bed3+
bed narrowPeak
BIOSAMPLE
ASSAY
22 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
STARR-seq
ChIP-seq
ATAC-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
9
2
4
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
1
1
Download