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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
300
total RNA-seq
165
ChIP-seq
34
ATAC-seq
17
pCHi-C
1
DNAme array
Assay category
300
Transcription
165
DNA binding
34
DNA accessibility
1
DNA methylation
Target of assay
140
histone
140
histone modification
76
broad histone mark
64
narrow histone mark
16
transcription factor
9
control
5
RNA binding protein
Date released
670
February, 2021
399
May, 2021
341
May, 2020
319
August, 2021
313
October, 2019
218
June, 2019
176
May, 2022
129
February, 2023
124
August, 2017
120
May, 2019
118
July, 2018
104
July, 2019
82
November, 2017
80
April, 2019
64
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
25
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
November, 2020
16
October, 2018
15
May, 2023
10
December, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
Available data
467
bigWig
441
bam
337
tsv
133
bed narrowPeak
90
tagAlign
fastq
2
bed bed3+
Organism
517
Homo sapiens
Biosample type
206
primary cell
158
tissue
132
in vitro differentiated cells
21
cell line
Organ
179
pancreas
26
epithelium
3
heart
2
connective tissue
2
embryo
1
bone element
1
bone marrow
1
thymus
Project
364
AMP
153
T1D
Genome assembly (visualization)
430
hg19
390
GRCh38
Lab
282
AMP-T2D consortium
235
Kyle Gaulton, UCSD
Audit category:
90
inconsistent ontology term
files.file_type!
hdf5
fastq
BIOSAMPLE
ASSAY
517 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
DNAme array
primary cell
monocyte
52
85
13
1
1
CD8-positive, alpha-beta T cell
2
33
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
+ See 11 more…
tissue
islet of Langerhans
154
cardiac atrium
1
cardiac ventricle
1
pancreas
1
thymus
1
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
+ See 10 more…
cell line
EndoC_BH1
4
1
16
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