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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
100
DNA binding
37
DNA accessibility
24
Transcription
2
DNA methylation
Target of assay
88
histone
88
histone modification
63
narrow histone mark
25
broad histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
48
October, 2019
30
June, 2019
28
May, 2019
25
November, 2017
15
July, 2019
12
February, 2020
2
March, 2020
2
November, 2018
2
October, 2017
1
February, 2023
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
165
Homo sapiens
Biosample type
147
tissue
18
primary cell
Organ
854
pancreas
704
liver
661
connective tissue
483
adipose tissue
454
epithelium
387
heart
354
kidney
228
vasculature
222
blood vessel
165
brain
159
bone element
135
artery
122
limb
81
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
165
AMP
Genome assembly (visualization)
135
GRCh38
118
hg19
Lab
165
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
hdf5
tagAlign
month_released!
September, 2018
BIOSAMPLE
ASSAY
165 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
6
14
1
1
1
temporal lobe
15
1
1
angular gyrus
13
layer of hippocampus
8
cerebellum (Hemisphere)
2
1
1
1
1
+ See 57 more…
primary cell
choroid plexus epithelial cell
3
1
1
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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