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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
432
ChIP-seq
159
total RNA-seq
21
ATAC-seq
5
DNase-seq
3
small RNA-seq
1
WGBS
Assay category
432
DNA binding
162
Transcription
26
DNA accessibility
1
DNA methylation
Target of assay
333
transcription factor
83
histone modification
82
histone
81
recombinant protein
56
RNA binding protein
52
narrow histone mark
30
broad histone mark
23
chromatin remodeller
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
170
May, 2020
52
November, 2018
50
December, 2017
20
May, 2022
18
August, 2017
17
August, 2021
7
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
2
June, 2019
1
March, 2020
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
hdf5
1
vcf
Organism
621
Homo sapiens
Biosample type
332
cell line
265
tissue
14
in vitro differentiated cells
10
primary cell
Organ
621
liver
567
connective tissue
469
pancreas
425
adipose tissue
266
epithelium
224
heart
219
brain
153
vasculature
148
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
621
AMP
Genome assembly (visualization)
616
hg19
528
GRCh38
Lab
587
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
hdf5
month_released!
July, 2018
BIOSAMPLE
ASSAY
621 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
WGBS
cell line
HepG2
326
5
1
tissue
liver
82
147
20
2
1
right lobe of liver
7
2
1
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
hepatic stellate cell
1
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