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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
84
ChIP-seq
52
single cell RNA-seq
35
snATAC-seq
16
pCHi-C
10
ATAC-seq
6
WGBS
4
Hi-C
Assay category
240
Transcription
84
DNA binding
45
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
151
May, 2021
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
45
May, 2020
8
January, 2021
7
August, 2020
3
October, 2022
1
March, 2023
Available data
190
bigWig
180
bam
169
fastq
102
tsv
84
bed narrowPeak
84
tagAlign
19
zippedFastqFolder
4
hic
3
bedpe bed3+
3
cool
Organism
395
Homo sapiens
Biosample type
395
primary cell
97
tissue
11
cell line
2
stem cell
Organ
72
epithelium
72
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
204
T1D
190
HPAP
1
ITG
Genome assembly (visualization)
191
GRCh38
183
hg19
Lab
204
Kyle Gaulton, UCSD
190
Klaus Kaestner, Upenn
1
ITG
Audit category:
30
audit script error
5
inconsistent ontology term
files.file_type!
hdf5
month_released!
May, 2022
award.project!
AMP
BIOSAMPLE
ASSAY
395 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
WGBS
Hi-C
primary cell
monocyte
53
84
1
Langerhans cell
52
27
pancreatic alpha cell
42
7
6
1
exocrine cell
39
pancreatic beta cell
11
3
1
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