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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
560
total RNA-seq
84
RNA microarray
34
pCHi-C
27
snATAC-seq
26
ATAC-seq
18
single cell RNA-seq
11
ChIP-seq
Hi-C
6
WGBS
3
snDrop-seq
Assay category
578
Transcription
53
DNA accessibility
11
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
3
histone
3
histone modification
3
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
316
August, 2021
309
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
100
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
November, 2019
59
September, 2020
54
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
34
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
4
August, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
604
tsv
588
bam
571
bigWig
89
txt
45
fastq
26
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
bedpe bed3+
2
ibed
Organism
769
Homo sapiens
Biosample type
578
tissue
107
cell line
48
primary cell
32
in vitro differentiated cells
4
stem cell
Organ
457
connective tissue
387
adipose tissue
150
bone element
71
heart
68
blood vessel
68
vasculature
66
artery
45
pancreas
37
epithelium
10
kidney
8
skeleton
6
limb
5
liver
3
musculature of body
2
brain
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
717
AMP
45
HPAP
7
T1D
Genome assembly (visualization)
596
hg19
584
GRCh38
Lab
724
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
143
inconsistent ontology term
32
audit script error
1
inconsistent replicate
files.file_type!
hdf5
assay_title!
Hi-C
BIOSAMPLE
ASSAY
769 results
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total RNA-seq
RNA microarray
pCHi-C
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
snDrop-seq
tissue
adipose tissue
381
1
bone element
84
bone tissue
58
islet of Langerhans
2
2
2
kidney
5
+ See 32 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
28
2
1
HepG2
1
1
early embryonic cell
2
iPSC derived cell line
2
+ See 4 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
cardiomyocytes (cardiac muscle cell)
1
2
lymphocyte of B lineage (iPSC)
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
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