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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
43
ChIP-seq
2
ATAC-seq
Assay category
206
DNA accessibility
43
DNA binding
Target of assay
41
histone
41
histone modification
26
broad histone mark
15
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
186
June, 2019
November, 2017
40
August, 2017
9
October, 2019
8
November, 2018
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2558
bam
2410
bigWig
1491
bed narrowPeak
1199
tsv
990
fastq
720
bigBed narrowPeak
312
tagAlign
267
bed bed3+
249
bed broadPeak
219
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
hic
22
bedpe bed3+
12
bed bed3
8
csv
7
bed bedgraph
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
243
Homo sapiens
Biosample type
204
tissue
43
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
46
musculature of body
36
limb
35
brain
30
heart
21
pancreas
18
epithelium
18
ureter
13
vasculature
11
blood vessel
10
connective tissue
5
liver
4
artery
4
eye
4
vein
adipose tissue
2
nerve
1
spleen
Project
249
AMP
Genome assembly (visualization)
225
GRCh38
225
hg19
Lab
247
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent assembly
files.file_type!
hdf5
organ_slims!
adipose tissue
month_released!
November, 2017
BIOSAMPLE
ASSAY
249 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 40 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 18 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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