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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
37
DNA accessibility
7
Transcription
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
9
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
238
bam
217
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
9
tsv
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
264
Homo sapiens
Biosample type
247
tissue
17
primary cell
Organ
599
liver
540
pancreas
385
epithelium
319
heart
290
kidney
264
brain
208
connective tissue
172
vasculature
167
blood vessel
115
limb
97
bone element
93
adipose tissue
85
artery
85
musculature of body
69
blood
69
bodily fluid
41
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
264
AMP
Genome assembly (visualization)
212
GRCh38
154
hg19
Lab
264
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
hdf5
assay_title!
total RNA-seq
RRBS
BIOSAMPLE
ASSAY
264 results
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ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
temporal lobe
15
1
+ See 74 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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