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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
31
DNase-seq
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
36
DNA accessibility
7
Transcription
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
29
June, 2019
28
May, 2019
16
October, 2017
11
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
237
bam
215
bigWig
202
bed narrowPeak
126
bigBed narrowPeak
118
tagAlign
46
bed broadPeak
37
bigBed broadPeak
33
bed bed3+
21
fastq
9
tsv
2
bed bedMethyl
2
bigBed bedMethyl
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
265
Homo sapiens
Biosample type
248
tissue
17
primary cell
Organ
601
liver
542
pancreas
391
epithelium
321
heart
294
kidney
266
brain
connective tissue
173
vasculature
167
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
265
AMP
Genome assembly (visualization)
211
GRCh38
155
hg19
Lab
265
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
hdf5
assay_title!
total RNA-seq
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
265 results
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ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
temporal lobe
15
1
+ See 74 more…
primary cell
choroid plexus epithelial cell
3
1
1
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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