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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
Assay category
171
DNA binding
DNA accessibility
12
Transcription
Target of assay
168
histone
168
histone modification
107
narrow histone mark
61
broad histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
78
October, 2019
63
November, 2017
25
May, 2019
11
July, 2019
6
October, 2017
Available data
181
bam
180
bigWig
169
bed narrowPeak
94
bigBed narrowPeak
82
tagAlign
14
bed broadPeak
12
fastq
12
tsv
6
bigBed broadPeak
1
tagAlign bed3+
Organism
183
Homo sapiens
Biosample type
174
tissue
9
primary cell
Organ
567
pancreas
552
connective tissue
523
liver
419
adipose tissue
243
epithelium
189
heart
183
brain
134
vasculature
132
blood vessel
79
artery
58
bone element
54
blood
54
bodily fluid
52
limb
51
kidney
29
embryo
28
nerve
20
musculature of body
14
spleen
10
vein
2
eye
1
pericardium
1
pituitary gland
Project
183
AMP
Genome assembly (visualization)
183
GRCh38
137
hg19
Lab
183
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
files.file_type!
hdf5
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
183 results
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ChIP-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
tissue
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
brain
11
1
caudate nucleus
12
+ See 66 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
cerebellar granule cell
2
choroid plexus epithelial cell
2
Purkinje cell
1
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