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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
63
total RNA-seq
32
DNase-seq
10
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
Assay category
171
DNA binding
70
Transcription
42
DNA accessibility
Target of assay
168
histone
168
histone modification
107
narrow histone mark
61
broad histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
78
October, 2019
66
February, 2021
63
November, 2017
30
June, 2019
25
May, 2019
12
July, 2019
7
October, 2017
2
November, 2018
Available data
281
bam
272
bigWig
209
bed narrowPeak
126
bigBed narrowPeak
82
tagAlign
70
tsv
46
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
15
fastq
1
tagAlign bed3+
Organism
283
Homo sapiens
Biosample type
269
tissue
14
primary cell
Organ
634
pancreas
566
connective tissue
531
liver
424
adipose tissue
294
epithelium
266
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
283
AMP
Genome assembly (visualization)
283
GRCh38
231
hg19
Lab
283
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
files.file_type!
hdf5
BIOSAMPLE
ASSAY
283 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
tissue
bone tissue
58
brain
11
1
14
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
+ See 82 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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