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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
Assay category
64
DNA binding
34
DNA accessibility
12
Transcription
Target of assay
168
histone
168
histone modification
narrow histone mark
61
broad histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
41
November, 2017
30
June, 2019
15
May, 2019
12
July, 2019
6
October, 2017
4
October, 2019
2
November, 2018
Available data
110
bam
109
bigWig
96
bed narrowPeak
93
bigBed narrowPeak
39
bed broadPeak
36
tagAlign
35
bigBed broadPeak
32
bed bed3+
12
tsv
11
fastq
Organism
110
Homo sapiens
Biosample type
99
tissue
11
primary cell
Organ
567
pancreas
549
connective tissue
490
liver
423
adipose tissue
246
epithelium
227
heart
190
kidney
166
vasculature
163
blood vessel
122
artery
110
brain
83
limb
66
bone element
53
blood
53
bodily fluid
48
musculature of body
23
nerve
22
embryo
18
ureter
14
spleen
8
skeleton
7
vein
5
eye
1
pericardium
Project
110
AMP
Genome assembly (visualization)
110
GRCh38
69
hg19
Lab
110
AMP-T2D consortium
Audit category:
2
missing controlled_by
files.file_type!
hdf5
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
tissue
brain
8
14
1
layer of hippocampus
10
temporal lobe
8
1
1
caudate nucleus
8
1
substantia nigra
8
+ See 17 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 2 more…
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