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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
79
total RNA-seq
32
DNase-seq
16
ATAC-seq
4
small RNA-seq
3
pCHi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
DNA binding
86
Transcription
49
DNA accessibility
2
DNA methylation
Target of assay
3
control
Date released
150
February, 2021
30
June, 2019
15
July, 2019
12
February, 2020
9
February, 2023
2
March, 2020
2
November, 2018
2
October, 2019
1
May, 2021
1
October, 2017
Available data
113
bam
108
bigWig
88
txt
84
tsv
41
bed narrowPeak
35
bed bed3+
33
bigBed narrowPeak
32
bed broadPeak
32
bigBed broadPeak
5
bed bed3
3
fastq
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
Organism
224
Homo sapiens
Biosample type
214
tissue
10
primary cell
Organ
727
pancreas
530
connective tissue
418
adipose tissue
393
epithelium
302
kidney
259
heart
238
liver
159
bone element
132
vasculature
129
blood vessel
107
artery
65
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
223
AMP
1
T1D
Genome assembly (visualization)
112
GRCh38
108
hg19
Lab
223
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
files.file_type!
hdf5
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
224 results
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RNA microarray
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
pCHi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
bone element
84
bone tissue
58
brain
1
14
1
1
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
1
1
1
+ See 34 more…
primary cell
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 3 more…
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