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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
84
RNA microarray
79
total RNA-seq
32
DNase-seq
16
ATAC-seq
4
small RNA-seq
3
pCHi-C
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
218
DNA binding
83
Transcription
49
DNA accessibility
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
150
February, 2021
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
12
February, 2020
12
July, 2019
9
February, 2023
2
March, 2020
2
November, 2018
1
May, 2021
Available data
306
bam
277
bigWig
211
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
88
txt
81
tsv
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
5
bed bed3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
439
Homo sapiens
Biosample type
423
tissue
16
primary cell
Organ
871
pancreas
789
liver
679
connective tissue
491
adipose tissue
452
epithelium
300
heart
290
kidney
280
brain
228
vasculature
222
blood vessel
159
bone element
139
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
438
AMP
1
T1D
Genome assembly (visualization)
280
GRCh38
228
hg19
Lab
438
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
87
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
hdf5
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
439 results
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ChIP-seq
RNA microarray
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
pCHi-C
RRBS
FAIRE-seq
tissue
bone element
84
bone tissue
58
brain
20
1
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
+ See 91 more…
primary cell
choroid plexus epithelial cell
3
1
1
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
astrocyte of the hippocampus
1
brain pericyte
1
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