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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1397
total RNA-seq
1228
ChIP-seq
489
ATAC-seq
361
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
52
pCHi-C
25
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
25
3D chromatin structure
Date released
8
March, 2020
4
July, 2019
3
August, 2021
3
October, 2022
2
November, 2019
2
October, 2019
1
December, 2018
1
March, 2019
1
March, 2023
Available data
19
hic
16
bedpe bed3+
5
bed bed3+
5
bigWig
hdf5
3
cool
1
bedpe
1
fastq
Organism
25
Homo sapiens
Biosample type
16
tissue
6
primary cell
in vitro differentiated cells
3
cell line
Organ
8
pancreas
6
epithelium
6
musculature of body
4
limb
3
blood vessel
3
heart
3
liver
3
vasculature
2
vein
1
kidney
Project
21
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
18
hg19
1
GRCh38
Lab
17
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
audit script error
1
inconsistent ontology term
files.file_type!
hdf5
target.investigated_as!
broad histone mark
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
25 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
2
EndoC_BH1
1
See all biosamples
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