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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
361
ChIP-seq
8
ATAC-seq
Assay category
361
DNA binding
8
DNA accessibility
Target of assay
244
transcription factor
100
histone
100
histone modification
74
control
66
recombinant protein
broad histone mark
40
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
356
November, 2017
341
May, 2020
323
May, 2021
310
August, 2021
302
August, 2017
258
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
104
July, 2019
88
November, 2018
79
December, 2017
64
March, 2020
62
May, 2019
59
September, 2020
57
October, 2018
56
September, 2018
55
November, 2019
49
April, 2018
47
September, 2023
43
April, 2019
35
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
May, 2024
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
356
bam
327
fastq
298
bigWig
275
bed narrowPeak
268
bigBed narrowPeak
62
bed broadPeak
56
bigBed broadPeak
41
tagAlign
3
tar
Organism
369
Homo sapiens
Biosample type
307
cell line
53
tissue
9
primary cell
Organ
307
liver
55
brain
6
epithelium
6
vasculature
5
pancreas
3
blood vessel
1
adipose tissue
1
connective tissue
1
spleen
Project
369
AMP
Genome assembly (visualization)
279
hg19
244
GRCh38
Lab
368
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
11
missing controlled_by
Audit category:
15
inconsistent control read length
4
inconsistent control run_type
files.file_type!
hdf5
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
369 results
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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
307
tissue
layer of hippocampus
10
caudate nucleus
7
cingulate gyrus
7
middle frontal area 46
7
substantia nigra
7
+ See 6 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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