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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
145
DNA binding
37
DNA accessibility
24
Transcription
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
broad histone mark
31
control
RNA binding protein
3
transcription factor
Date released
83
October, 2019
46
November, 2017
30
June, 2019
15
July, 2019
13
May, 2019
12
February, 2020
6
October, 2017
2
March, 2020
2
November, 2018
1
February, 2023
Available data
179
bam
159
bigWig
139
bed narrowPeak
73
tagAlign
66
bigBed narrowPeak
40
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
26
tsv
12
fastq
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
210
Homo sapiens
Biosample type
195
tissue
15
primary cell
Organ
858
pancreas
690
liver
629
connective tissue
470
epithelium
466
adipose tissue
336
kidney
325
heart
210
brain
184
vasculature
179
blood vessel
159
bone element
126
artery
88
limb
76
musculature of body
60
eye
59
blood
59
bodily fluid
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
210
AMP
Genome assembly (visualization)
153
GRCh38
133
hg19
Lab
210
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
hdf5
target.investigated_as!
broad histone mark
RNA binding protein
BIOSAMPLE
ASSAY
210 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
7
14
1
1
1
layer of hippocampus
11
caudate nucleus
7
1
1
substantia nigra
8
1
temporal lobe
7
1
1
+ See 77 more…
primary cell
choroid plexus epithelial cell
2
1
1
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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