Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
31
ChIP-seq
4
ATAC-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
37
DNA accessibility
31
DNA binding
Transcription
2
DNA methylation
Target of assay
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
18
November, 2017
8
October, 2019
4
July, 2019
4
October, 2017
3
May, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
65
bam
44
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
19
tagAlign
11
fastq
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3
Organism
72
Homo sapiens
Biosample type
60
tissue
12
primary cell
Organ
495
liver
315
pancreas
228
epithelium
199
kidney
130
heart
124
connective tissue
97
bone element
96
vasculature
91
blood vessel
72
brain
68
blood
68
bodily fluid
66
limb
63
artery
58
adipose tissue
54
musculature of body
39
eye
19
spleen
18
ureter
14
nerve
12
skeleton
11
embryo
11
lung
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
72
AMP
Genome assembly (visualization)
37
GRCh38
32
hg19
Lab
72
AMP-T2D consortium
files.file_type!
hdf5
target.investigated_as!
histone
assay_slims!
Transcription
BIOSAMPLE
ASSAY
72 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
14
3
1
1
cerebellum (Hemisphere)
1
2
1
caudate nucleus
1
2
frontal cortex
2
1
layer of hippocampus
3
+ See 22 more…
primary cell
choroid plexus epithelial cell
1
2
1
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
Download