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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
200
ATAC-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
RRBS
4
Hi-C
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
288
DNA accessibility
279
DNA binding
58
DNA methylation
4
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
101
May, 2022
100
May, 2020
59
August, 2017
55
June, 2019
46
September, 2018
35
February, 2021
31
October, 2019
13
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
September, 2020
2
November, 2020
Available data
359
bigWig
357
bam
295
bed narrowPeak
161
fastq
109
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
646
Homo sapiens
Biosample type
1499
tissue
646
primary cell
545
cell line
252
in vitro differentiated cells
8
stem cell
Organ
238
epithelium
188
pancreas
33
vasculature
30
kidney
27
blood vessel
24
connective tissue
20
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
394
AMP
144
HPAP
108
T1D
Genome assembly (visualization)
369
hg19
283
GRCh38
Lab
361
AMP-T2D consortium
144
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
Audit category:
43
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
hic
assay_slims!
Transcription
BIOSAMPLE
ASSAY
646 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
pancreatic beta cell
13
23
16
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
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