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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
21
RRBS
18
small RNA-seq
11
Hi-C
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
11
3D chromatin structure
5
DNA accessibility
Date released
10
July, 2019
2
October, 2019
1
August, 2017
1
August, 2021
1
December, 2018
1
November, 2018
Available data
hic
20
bedpe bed3+
10
bigWig
5
bam
5
bed bed3+
5
bed narrowPeak
5
bigBed narrowPeak
5
hdf5
3
cool
3
fastq
1
bedpe
1
tar
Organism
16
Homo sapiens
Biosample type
9
tissue
5
primary cell
2
cell line
Organ
4
brain
4
limb
4
musculature of body
4
pancreas
3
blood vessel
3
epithelium
3
vasculature
2
liver
1
connective tissue
1
kidney
1
vein
Project
16
AMP
Genome assembly (visualization)
10
hg19
1
GRCh38
Lab
15
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent assembly
files.file_type!
hic
BIOSAMPLE
ASSAY
16 results
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Clear Filters
Hi-C
FAIRE-seq
tissue
gastrocnemius medialis
4
islet of Langerhans
1
1
frontal cortex
1
kidney
1
pancreas
1
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
endothelial cell of umbilical vein
1
cell line
HepG2
1
Panc1
1
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