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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1290
total RNA-seq
974
ChIP-seq
470
ATAC-seq
235
single cell RNA-seq
200
DNase-seq
87
RNA microarray
58
WGBS
57
snATAC-seq
56
pCHi-C
18
small RNA-seq
17
RRBS
10
Hi-C
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
10
3D chromatin structure
Date released
8
July, 2019
1
August, 2021
1
October, 2019
Available data
hic
20
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
3
cool
1
bedpe
fastq
Organism
10
Homo sapiens
Biosample type
5
tissue
4
primary cell
1
cell line
Organ
4
limb
4
musculature of body
3
brain
2
blood vessel
2
epithelium
2
pancreas
2
vasculature
1
connective tissue
1
liver
Project
10
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
9
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent assembly
files.file_type!
hic
fastq
BIOSAMPLE
ASSAY
10 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
1
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
Panc1
1
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