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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ATAC-seq
11
snATAC-seq
2
FAIRE-seq
Assay category
106
DNA accessibility
73
Transcription
61
DNA binding
49
DNA methylation
1
3D chromatin structure
Date released
57
May, 2022
16
May, 2021
13
February, 2023
8
January, 2021
4
March, 2020
3
October, 2019
2
March, 2019
1
August, 2017
1
August, 2022
1
November, 2018
Available data
39
zippedFastqFolder
21
bam
21
fastq
20
bed narrowPeak
6
bigWig
2
bigBed narrowPeak
2
tsv
1
bed broadPeak
Organism
106
Homo sapiens
Biosample type
49
tissue
39
primary cell
18
cell line
Organ
106
pancreas
72
epithelium
28
eye
21
liver
20
connective tissue
10
lung
9
blood
9
bodily fluid
9
kidney
4
bone element
4
skeleton
3
adipose tissue
3
brain
2
musculature of body
1
blood vessel
1
pituitary gland
1
skin of body
1
vasculature
1
vein
Project
46
AMP
39
HPAP
21
T1D
Genome assembly (visualization)
79
hg19
GRCh38
Lab
39
Klaus Kaestner, Upenn
39
Kyle Gaulton, UCSD
26
AMP-T2D consortium
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
18
inconsistent ontology term
1
audit script error
files.file_type!
hic
assembly!
GRCh38
BIOSAMPLE
ASSAY
106 results
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ATAC-seq
snATAC-seq
FAIRE-seq
tissue
islet of Langerhans
36
7
1
pancreas
4
1
primary cell
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
cell line
EndoC_BH1
18
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