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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
pCHi-C
1
Hi-C
Assay category
1
3D chromatin structure
Date released
2
March, 2020
1
August, 2018
1
August, 2021
Available data
433
bam
407
fastq
239
bigWig
200
tsv
185
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
tissue
Organ
1
adipose tissue
1
connective tissue
1
pancreas
Project
4
AMP
Genome assembly (visualization)
2
hg19
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
files.file_type!
hic
assembly!
GRCh38
BIOSAMPLE
ASSAY
4 results
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pCHi-C
Hi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
white fat cell
1
tissue
islet of Langerhans
1
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