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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
99
total RNA-seq
75
snATAC-seq
50
ATAC-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
240
Transcription
125
DNA accessibility
47
DNA methylation
Date released
134
May, 2022
99
February, 2023
56
September, 2020
47
September, 2023
45
February, 2021
18
April, 2020
17
May, 2021
16
January, 2021
2
March, 2020
Available data
159
fastq
153
zippedFastqFolder
6
tsv
3
bedpe bed3+
3
cool
hic
Organism
434
Homo sapiens
Biosample type
335
primary cell
94
tissue
5
cell line
Organ
167
pancreas
139
epithelium
47
kidney
18
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
311
HPAP
58
T1D
47
KPMP
18
LungMap
Genome assembly (visualization)
GRCh38
186
hg19
Lab
311
Klaus Kaestner, Upenn
56
Kyle Gaulton, UCSD
47
KPMP
18
Xin Sun, UCSD
2
AMP-T2D consortium
Audit category:
27
audit script error
1
inconsistent ontology term
files.file_type!
hic
assembly!
GRCh38
award.project!
AMP
BIOSAMPLE
ASSAY
434 results
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single cell RNA-seq
total RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
22
31
pancreatic beta cell
11
13
16
exocrine cell
39
peripheral blood mononuclear cell
8
+ See 16 more…
tissue
kidney
47
islet of Langerhans
7
6
11
lung
9
9
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
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