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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
3
DNase-seq
1
FAIRE-seq
Assay category
190
DNA binding
89
Transcription
15
DNA methylation
9
DNA accessibility
Target of assay
125
histone modification
124
histone
67
broad histone mark
57
narrow histone mark
42
control
23
transcription factor
2
RNA binding protein
Date released
689
February, 2021
341
May, 2020
336
November, 2017
303
August, 2017
295
October, 2019
275
August, 2021
267
May, 2021
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
59
September, 2020
54
November, 2019
51
December, 2017
49
April, 2018
48
March, 2020
47
September, 2023
40
May, 2024
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
8
December, 2019
7
August, 2020
4
January, 2018
4
March, 2023
3
August, 2018
3
June, 2018
3
March, 2019
1
August, 2022
1
October, 2022
Available data
233
fastq
228
bam
224
bigWig
99
bed narrowPeak
89
tsv
71
tagAlign
41
bigBed narrowPeak
bed broadPeak
26
bed bed3+
14
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
302
Homo sapiens
Biosample type
258
tissue
in vitro differentiated cells
45
primary cell
Organ
176
pancreas
56
adipose tissue
56
connective tissue
54
liver
29
epithelium
13
musculature of body
Project
303
AMP
Genome assembly (visualization)
187
hg19
182
GRCh38
Lab
303
AMP-T2D consortium
Audit category:
34
missing controlled_by
Audit category:
10
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
hic
bed broadPeak
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
303 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
36
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
35
3
skeletal muscle tissue
9
4
white adipose tissue
12
+ See 4 more…
primary cell
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
skeletal muscle myoblast
2
1
1
pancreatic acinar cell
1
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