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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
29
ChIP-seq
8
ATAC-seq
6
DNase-seq
2
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
54
Transcription
29
DNA binding
15
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
6
control
6
transcription factor
2
RNA binding protein
Date released
66
February, 2021
20
October, 2019
6
November, 2017
5
July, 2019
4
June, 2019
Available data
98
bam
85
bigWig
54
tsv
33
bed narrowPeak
21
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
8
bed bed3+
6
fastq
6
tagAlign
2
hdf5
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
101
Homo sapiens
Biosample type
tissue
66
cell line
35
primary cell
Organ
503
epithelium
437
pancreas
429
liver
137
connective tissue
101
vasculature
95
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
21
brain
20
vein
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
101
AMP
Genome assembly (visualization)
93
hg19
86
GRCh38
Lab
101
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
hic
biosample_type!
tissue
BIOSAMPLE
ASSAY
101 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
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