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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1391
ChIP-seq
1150
total RNA-seq
289
ATAC-seq
180
DNase-seq
174
single cell RNA-seq
87
RNA microarray
31
pCHi-C
28
WGBS
28
snATAC-seq
16
small RNA-seq
11
RRBS
10
MeRIP-seq
7
Hi-C
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1150
Transcription
Date released
522
February, 2021
143
May, 2020
120
July, 2018
89
August, 2017
67
August, 2021
43
May, 2021
31
July, 2019
26
May, 2022
26
October, 2019
25
February, 2020
20
November, 2019
13
February, 2023
13
March, 2020
6
April, 2018
5
January, 2019
1
May, 2023
Available data
1044
tsv
1011
bam
1005
bigWig
108
fastq
59
txt
Organism
1150
Homo sapiens
Biosample type
1037
tissue
247
primary cell
136
in vitro differentiated cells
113
cell line
Organ
455
connective tissue
397
adipose tissue
322
pancreas
184
liver
67
heart
62
bone element
59
blood vessel
59
vasculature
54
artery
54
kidney
36
epithelium
19
eye
17
brain
8
embryo
7
limb
5
musculature of body
5
nerve
4
skeleton
1
spinal cord
Project
1141
AMP
9
T1D
Genome assembly (visualization)
1006
GRCh38
1006
hg19
Lab
1059
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
12
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
Audit category:
37
inconsistent ontology term
files.file_type!
hic
BIOSAMPLE
ASSAY
1150 results
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total RNA-seq
tissue
adipose tissue
382
islet of Langerhans
298
liver
167
bone tissue
58
kidney
49
+ See 47 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
HepG2
14
H1-hESC
8
early embryonic cell
2
+ See 4 more…
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