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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
510
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
11
RRBS
5
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
510
DNA binding
470
DNA accessibility
38
DNA methylation
5
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
broad histone mark
187
control
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
228
August, 2021
202
October, 2019
193
May, 2020
188
August, 2017
163
June, 2019
120
July, 2018
95
February, 2023
77
July, 2019
66
May, 2022
55
May, 2019
47
September, 2023
40
May, 2021
40
November, 2017
40
October, 2018
39
November, 2019
37
April, 2019
33
March, 2020
25
February, 2020
19
April, 2020
19
November, 2018
15
May, 2023
15
May, 2024
14
December, 2017
13
October, 2017
8
January, 2021
6
April, 2018
6
September, 2017
4
December, 2018
4
March, 2019
4
November, 2020
3
December, 2019
3
January, 2019
2
January, 2018
1
August, 2022
Available data
1596
bam
1426
bigWig
1076
tsv
656
bed narrowPeak
292
bigBed narrowPeak
253
fastq
193
bed broadPeak
186
bed bed3+
176
bigBed broadPeak
162
tagAlign
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2364
Homo sapiens
Biosample type
2369
tissue
950
primary cell
285
in vitro differentiated cells
280
cell line
9
stem cell
Organ
510
connective tissue
451
adipose tissue
444
pancreas
296
liver
287
kidney
241
heart
195
brain
158
bone element
93
blood vessel
93
vasculature
88
limb
64
musculature of body
58
artery
56
eye
27
nerve
20
lung
18
ureter
16
skeleton
15
epithelium
15
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2272
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1524
GRCh38
1458
hg19
Lab
2044
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
15
Patrick T. Ellinor, Broad
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
9
audit script error
Audit category:
4
missing controlled_by
Audit category:
3
inconsistent control read length
files.file_type!
hic
target.investigated_as!
broad histone mark
transcription factor
BIOSAMPLE
ASSAY
2369 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
50
68
6
1
7
4
1
1
1
4
adipose tissue
382
2
3
3
1
liver
167
86
20
1
2
3
1
1
1
kidney
49
16
75
64
13
6
1
1
bone element
84
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