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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
47
WGBS
25
total RNA-seq
20
ChIP-seq
10
MeRIP-seq
9
snATAC-seq
2
Capture-C
2
Hi-C
2
RRBS
1
pCHi-C
Assay category
85
DNA accessibility
49
DNA methylation
25
Transcription
20
DNA binding
2
3D chromatin structure
Target of assay
14
histone
14
histone modification
11
control
8
broad histone mark
6
narrow histone mark
5
nucleotide modification
Date released
80
May, 2022
February, 2023
20
August, 2017
19
September, 2020
17
May, 2021
10
November, 2020
8
January, 2021
7
August, 2020
7
March, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
October, 2019
3
March, 2019
2
July, 2019
1
August, 2022
1
February, 2020
1
October, 2017
Available data
bam
623
bigWig
434
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
194
Homo sapiens
Biosample type
112
primary cell
55
tissue
27
cell line
Organ
209
kidney
194
pancreas
149
epithelium
143
heart
108
liver
85
bone element
77
connective tissue
48
adipose tissue
42
brain
37
musculature of body
23
eye
20
lung
13
vasculature
12
blood vessel
9
blood
9
bodily fluid
8
limb
5
gonad
5
ovary
4
artery
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
112
HPAP
72
AMP
10
T1D
Genome assembly (visualization)
16
hg19
14
GRCh38
Lab
112
Klaus Kaestner, Upenn
57
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
26
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
hic
bam
month_released!
February, 2023
BIOSAMPLE
ASSAY
194 results
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Clear Filters
ATAC-seq
WGBS
total RNA-seq
ChIP-seq
MeRIP-seq
snATAC-seq
Capture-C
Hi-C
RRBS
pCHi-C
primary cell
pancreatic alpha cell
29
31
15
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
tissue
islet of Langerhans
9
7
20
4
5
1
1
pancreas
1
4
1
1
body of pancreas
1
cell line
EndoC_BH1
18
6
2
Panc1
1
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