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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ChIP-seq
2
WGBS
1
ATAC-seq
1
pCHi-C
Assay category
7
DNA binding
2
DNA methylation
1
DNA accessibility
Target of assay
histone
6
histone modification
4
broad histone mark
4
control
3
other context
3
other post-translational modification
3
transcription factor
2
narrow histone mark
Date released
8
November, 2018
December, 2018
1
January, 2019
1
March, 2020
1
October, 2017
Available data
11
bam
11
fastq
7
bigWig
5
bed narrowPeak
4
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
bigBed broadPeak
1
tsv
Organism
11
Homo sapiens
Biosample type
11
tissue
Organ
781
pancreas
637
liver
597
connective tissue
457
adipose tissue
407
epithelium
263
heart
245
kidney
159
bone element
149
vasculature
147
blood vessel
117
artery
64
brain
54
eye
41
blood
41
bodily fluid
37
limb
28
musculature of body
25
embryo
20
lung
17
nerve
16
skeleton
11
spleen
3
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
11
AMP
Genome assembly (visualization)
6
GRCh38
4
hg19
Lab
11
AMP-T2D consortium
files.file_type!
hic
bigBed broadPeak
month_released!
December, 2018
target.investigated_as!
histone
BIOSAMPLE
ASSAY
11 results
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ChIP-seq
WGBS
ATAC-seq
pCHi-C
tissue
spleen
7
2
1
1
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