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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
1
Hi-C
Assay category
21
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
7
transcription factor
6
broad histone mark
6
narrow histone mark
2
RNA binding protein
2
control
Date released
19
August, 2017
2
September, 2017
1
October, 2019
Available data
689
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
bigBed broadPeak
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
22
Homo sapiens
Biosample type
21
tissue
1
cell line
Organ
22
pancreas
19
connective tissue
8
liver
5
epithelium
4
adipose tissue
3
brain
3
embryo
2
blood vessel
2
vasculature
1
musculature of body
Project
22
AMP
Genome assembly (visualization)
22
GRCh38
22
hg19
Lab
22
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
1
inconsistent assembly
files.file_type!
hic
bigBed broadPeak
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
Hi-C
tissue
islet of Langerhans
21
cell line
Panc1
1
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