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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
31
ChIP-seq
3
small RNA-seq
2
ATAC-seq
2
WGBS
Assay category
398
Transcription
31
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
19
control
12
transcription factor
Date released
386
February, 2021
18
October, 2018
15
August, 2017
12
July, 2019
1
November, 2019
1
October, 2017
Available data
442
bam
425
bigWig
401
tsv
44
fastq
13
bed narrowPeak
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
433
Homo sapiens
Biosample type
431
tissue
2
primary cell
Organ
598
pancreas
568
connective tissue
433
adipose tissue
323
liver
241
epithelium
117
heart
116
brain
102
vasculature
101
blood vessel
77
artery
66
bone element
40
kidney
36
embryo
30
limb
16
nerve
11
spleen
10
musculature of body
8
skeleton
7
vein
6
blood
6
bodily fluid
1
eye
1
pericardium
1
pituitary gland
Project
433
AMP
Genome assembly (visualization)
414
GRCh38
412
hg19
Lab
433
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
hic
bigBed narrowPeak
BIOSAMPLE
ASSAY
433 results
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total RNA-seq
ChIP-seq
small RNA-seq
ATAC-seq
WGBS
tissue
adipose tissue
381
1
2
subcutaneous adipose tissue
6
10
1
omental fat pad
4
8
1
1
white adipose tissue
12
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
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