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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
18
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
17
control
1
histone
1
histone modification
1
narrow histone mark
Date released
23
October, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
1
May, 2019
Available data
114
bam
92
bed narrowPeak
91
bigWig
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
8
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
39
Homo sapiens
Biosample type
39
tissue
Organ
848
pancreas
656
connective tissue
481
adipose tissue
442
epithelium
431
liver
296
heart
249
kidney
159
bone element
159
brain
150
vasculature
148
blood vessel
116
artery
55
eye
47
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
7
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
39
AMP
Genome assembly (visualization)
13
GRCh38
12
hg19
Lab
39
AMP-T2D consortium
files.file_type!
hic
bigBed narrowPeak
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
11
1
5
tibial artery
5
1
1
gastrocnemius medialis
1
4
muscle of leg
1
1
adrenal gland
1
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