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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
43
DNA accessibility
23
DNA binding
9
Transcription
1
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
10
February, 2021
10
October, 2019
6
August, 2021
3
February, 2020
1
July, 2019
1
March, 2020
Available data
180
bam
bigWig
129
bed narrowPeak
79
bigBed narrowPeak
68
tsv
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
fastq
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
77
Homo sapiens
Biosample type
62
tissue
10
cell line
5
primary cell
Organ
316
pancreas
222
kidney
217
epithelium
167
liver
166
heart
114
connective tissue
101
bone element
78
vasculature
77
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
26
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
5
gonad
5
ovary
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
77
AMP
Genome assembly (visualization)
43
GRCh38
8
hg19
Lab
77
AMP-T2D consortium
files.file_type!
hic
bigWig
BIOSAMPLE
ASSAY
77 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
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cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
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