Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
23
DNA binding
9
Transcription
1
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
11
May, 2019
10
October, 2019
6
August, 2021
3
February, 2020
2
February, 2021
1
July, 2019
1
March, 2020
Available data
169
bam
bigWig
83
bed narrowPeak
79
bigBed narrowPeak
68
tsv
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
fastq
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
34
Homo sapiens
Biosample type
27
tissue
5
primary cell
2
cell line
Organ
205
pancreas
165
liver
148
epithelium
147
kidney
123
heart
98
connective tissue
89
bone element
64
adipose tissue
62
brain
35
vasculature
34
blood vessel
27
eye
26
musculature of body
25
limb
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
34
AMP
Lab
34
AMP-T2D consortium
files.file_type!
hic
bigWig
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
34 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
pCHi-C
tissue
aorta
2
4
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
5
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
Download