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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
1
WGBS
pCHi-C
Assay category
43
DNA accessibility
23
DNA binding
9
Transcription
1
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
10
February, 2021
10
October, 2019
6
August, 2021
3
February, 2020
1
July, 2019
Available data
180
bam
bigWig
129
bed narrowPeak
79
bigBed narrowPeak
67
tsv
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
fastq
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
76
Homo sapiens
Biosample type
61
tissue
10
cell line
5
primary cell
Organ
315
pancreas
220
kidney
217
epithelium
164
liver
163
heart
109
connective tissue
100
bone element
77
vasculature
76
blood vessel
64
adipose tissue
62
brain
56
artery
51
eye
31
limb
25
musculature of body
19
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
8
embryo
8
spleen
5
vein
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
76
AMP
Genome assembly (visualization)
43
GRCh38
8
hg19
Lab
76
AMP-T2D consortium
files.file_type!
hic
bigWig
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
76 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
tissue
coronary artery
35
2
1
aorta
2
4
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
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cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
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