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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
43
ATAC-seq
19
ChIP-seq
3
pCHi-C
3
total RNA-seq
2
WGBS
1
RRBS
Assay category
96
Transcription
43
DNA accessibility
19
DNA binding
3
DNA methylation
Target of assay
19
control
Date released
92
August, 2021
36
February, 2023
10
April, 2019
10
February, 2021
6
May, 2019
3
February, 2020
3
July, 2019
3
March, 2020
1
June, 2019
Available data
bigWig
206
bam
187
bed narrowPeak
168
tsv
90
bigBed narrowPeak
29
bed bed3+
29
bed broadPeak
29
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
hic
Organism
164
Homo sapiens
Biosample type
153
tissue
10
cell line
1
primary cell
Organ
289
pancreas
214
kidney
184
epithelium
166
liver
164
heart
105
connective tissue
78
vasculature
77
blood vessel
65
adipose tissue
63
brain
56
artery
55
eye
31
limb
25
musculature of body
20
lung
17
bone element
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
6
embryo
5
gonad
5
ovary
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
164
AMP
Genome assembly (visualization)
43
GRCh38
9
hg19
Lab
164
AMP-T2D consortium
Audit category:
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files.file_type!
hic
bigWig
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
164 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
total RNA-seq
WGBS
RRBS
tissue
coronary artery
35
2
1
heart left ventricle
18
6
1
2
1
heart right ventricle
17
2
1
right cardiac atrium
18
1
1
left cardiac atrium
18
+ See 10 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
cardiac fibroblast
1
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